In my chemistry course, the addition of the “per” prefix generally means that the oxoanion of relevance will have one more oxygen than the “base” ion.
e.g. chlorate = $\ce{ClO3-}$, perchlorate = $\ce{ClO4-}$
However, permanganate is $\ce{MnO4-}$ and manganate is $\ce{MnO4^2-}$. The charges are different but there are still four oxygen atoms in each, so it seems to violate the convention. Any thoughts?