Did he know the mass of a hydrogen atom at the time? Because J.J. Thomson already discovered that electron is a lot lighter than a hydrogen atom (about 1800 I believe).
The idea that the mass to charge ratio of cathode ray "particle" (modern day electron) is a lot lighter than hydrogen came about indirectly from electrochemical experiments and the concept of equivalents.
Very briefly, from a Chapter written by Sir J.J. Thomson in 1924
~ THE STATE OF SCIENCE IN 1924 ~
[Continued discussion] previously determined $e / m v^{2}$, so that
when we know $v$ we can find $e / m$. This was found to be equal to
$1.8 \times 10^{7}$.
Now if $\mathrm{E}$ is the charge of electricity carried by the
hydrogen atom in the electrolysis of solutions, and M the mass of that
atom, $\mathrm{E} / \mathrm{M}$ can be determined by measuring the
quantity of hydrogen liberated when a known quantity of electricity
passes through an aqueous solution. This was done long ago, and the
result was that $\mathrm{E} / \mathrm{M}=10^{4}$. Special
investigations have shown that $e$, the charge on the electron, is
equal to $\mathrm{E}$, the charge on the hydrogen ion ; hence since
$e=\mathrm{E}$ and $e / m=1.8 \times 10^{7}$, while $\mathrm{E} /
\mathrm{M}=10^{4}, m=\mathrm{M} / 1800$ or the mass of an electron is
only $1 / 1800$ of that of an atom of hydrogen.
By the way, the absolute mass of atoms in the periodic table is not known. All the atomic weights or atomic masses are relative, relative to an arbitrary element-chosen by humans rather than any fundamental reason. Historically, one of the elements has been given a fixed number as its mass. In the long history of atomic weights, the element with a "fixed" mass was hydrogen. It was given a fixed mass of 1 (exact), later oxygen was chosen as 16 (exact) and this choice moved back and forth. Recently, from 1960s, the fixed element was an isotope of carbon, called C-12. It was given an exact mass of 12. Recently this has been slightly changed.
Following the same lines of reasoning, finding the absolute mass of electrons by experiments was not easy. You had to know the exact magnetic field and electric field values. Finding $e/m$ was a scientific feat of its own. Absolute measurements are always difficult.