I've always thought that orbitals lead to a loss of symmetry, and have never been able to give myself a satisfactory answer to this.
I'll explain via an example:
Let's take an $\ce{N^3+}$ atom. It's perfectly spherical, and has no distinguishing 'up' and 'down'. There is no set of 'preferred coordinate axes' for it since it has spherical symmetry (except the nucleus, but I doubt that matters).
Now, let's give it three electrons. They arrange themselves in the $2p$ orbitals, one in each (by Hund's rule). Now, suddenly, the atom has lost its spherical symmetry — we have a distinct triplet of orthogonal directions separate from the others.
This leads to these questions: How can symmetry 'break' this way? Are the directions of the axes 'hidden' in the atom beforehand? Are they themselves wavefunctions (though a wavefunction of wavefunctions sound odd to me, this explanation makes sense-random events can break symmetries)
So, I'd like a clear explanation of how/why the symmetry breaks.