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Sep 12, 2014 at 18:02 comment added Geoff Hutchison @F'x Yes, both Open Babel and Avogadro automatically create Z-matrices with "reasonable" physical order. For some definition of reasonable. For your question, I think the answer above is much better - it can be very hard to optimize so many collinear atoms.
Oct 19, 2012 at 20:45 review Late answers
Oct 22, 2012 at 4:43
Jun 8, 2012 at 8:06 comment added F'x How does that relate to Z-matrices? Can Avogadro or openbabel produce Z-matrices from 3D coordinates? Are they then in “reasonable” physical order?
Jun 8, 2012 at 2:36 history answered Daniel CC BY-SA 3.0