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Oct 1, 2018 at 7:47 vote accept meTchaikovsky
Oct 1, 2018 at 7:45 answer added Feodoran timeline score: 3
Oct 1, 2018 at 7:40 comment added porphyrin $\vec T_{nucleus}$ is the kinetic energy of the nucleus. Normally under BO approx. the equations are solved at a series of fixed nuclear $R$; this is what you describe initially and a PES results. If you want to describe motion over a PES during a reaction (dynamics) a common method is to use a LEPS (London-Eyring-Polyani-Sato) potential, which although empirical is based on known potentials obtained from spectroscopic experiments. See Steinfeld, Franscico, & Hase ' Chemical Kinetics & Dynamics' publ Prentice-Hall, or Hirst 'Molecular Structure & Reaction Dynamics'.
Oct 1, 2018 at 6:46 history asked meTchaikovsky CC BY-SA 4.0