> I have searched and searched, oh how I have searched.

Do you know what I always tell my mom when she asks me to find something in the Internet she was not able to find herself? I ask her: "Are you sure that the thing you are looking for even exists?"

> I am looking for a 3 dimensional visualization of a whole (moderately
> complex, hydrogen is just a ball) atom that includes 3 dimensional
> orbital geometry.

 1. Hydrogen atom is *not* "just a ball".
 2. There is *no* orbitals. In short, except for one-electron systems (such as the hydrogen atom) orbital description is just an *approximate model* of the reality.
 3. Usually when one asks to visualize a physical object, he/she wants to visualize its physical "boundaries" with respect to some medium. The notion of such "boundary" simply looses its meaning in the microscopic world: atoms do not have "boundaries" like macroscopic objects do.