Questions tagged [dna-rna]

For questions regarding nucleic acids, their properties, structures, functions etc.

11 questions with no upvoted or accepted answers
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How to model CRISPR/Cas9 binding and cleavage using a generalized Kittel's zipper model?

I am thinking about how to model the binding of a CRISPR/Cas9+guide-RNA complex to a double-stranded DNA that cause its cleavage. This post describes four steps at which a CRISPR/Cas9 system binds and ...
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0answers
464 views

Why does the keto tautomer of guanine have lower energy?

Looking at the keto and enol forms of guanine, it would seem as if the enol form is more stable, due to the fact that aromaticity is established with the enol form. However, according to a question on ...
3
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0answers
99 views

Is DNA a base inside the cell?

DNA is deoxyribonucleic acid because it has phosphate groups in every one of it's nucleotides. However, in aqueous solutions protons will ionize, leaving phosphates alone as negative groups, i.e., ...
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0answers
26 views

3' terminal phosphate (p at the end of RNA sequence)

I am reading the paper: Petersheim, M. and Turner, D.H. (1983) Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ...
2
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0answers
20 views

'Ab initio' couplings for DNA used in charge transport

I came across a publication by Senthilkumar et al. [1] in order to compute charge transfer through the DNA. Table 3, for instance, gives the coupling between bases along the leading (or retarded) ...
2
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0answers
104 views

What do DNA crystals look like?

I had about 5 ug DNA suspended in water, which I dried thoroughly in a vacufuge. I obtained a whitish crystal (very similar to table salt, although the structure seems uneven and it's hard to tell) ...
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0answers
28 views

What do natural hybrids of peptides and nucleic acids look like?

Until recently I thought that there was a clean distinction between polypeptides and oligonucleotides, but apparently there are recent studies of therapeutic compounds that could be described as "...
1
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0answers
45 views

Do you need concentrated sulfuric acid to make Dische diphenylamine reagent and test for DNA?

I'd like to do a DNA quantification experiment for a college project. I don't want to use 16 M sulfuric acid. Is it possible to use more dilute acid and get a reasonably good result?
1
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0answers
70 views

Is presence of air necessary for silica gel to absorb moisture?

I am a biologist currently doing field work where I need to quickly dry leaf samples using silica gel crystals. I use the orange indicating kind that are 2-4mm in size. The setup is like this. I stuff ...
0
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0answers
21 views

What is the composition, function, and classification of “6-Thio-2-Deoxyguanosine” and “13-mer thio-phosphoramidate”? How do I learn more about them?

I am assigned the task of explaining a biomedical research paper, it is about telomere and telomerase , and it talks a lot about the molecule Thio-2-Deoxyguanosine , 13-mer thio-phosphoramidate and &...
-1
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1answer
31 views

Find volume of sample such that it contains 100ng of DNA

Im struggling with the maths of concentrationsand volumes and things..Ill give the question, then my thoughts on it: A DNA trimer strand, ab, has moleuclar weight of $9309ng/\mu mol$. I#m designing a ...