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Questions tagged [density-functional-theory]

Density functional theory (DFT) is a quantum mechanical model used to estimate the electronic structure of molecules and condensed matter. In broad terms, DFT works by treating all the electrons in the system as a single electron density, and computing physical quantities of interest as functionals of that electron density. (from Physics.SE)

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Density Functional Theory with Generalized Gradient Approxmations (GGA) - What Happens if the Electron Density Shows a “Kink” at the Ion Position?

My question may be stupid, so please correct me if you find anything which is obviously erroneous. In the following I will place a question mark (?) besides points/steps I consider doubtful. My ...
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359 views

Calculation of rate constant for bimolecular reaction from Gaussian DFT calculations

I am working with a bimolecular reaction for which I have computed the energy profile. I have output files for TS and reactants which I intend to use for rate constant calculations. From TST we have: ...
6
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219 views

How to define the initial guess for the electron density?

This is a technical question. If I have a one-dimensional box of length L, and an electron density existing in the box and integrating to N electrons. And if I want to determine the electron density ...
6
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1k views

Warning during geometry optimization via Gaussian

I have some recurrent problem with my DFT calculations [functional: hseh1pbe; basis:6-31+g(d,p), object: porphyrin derivative]. During the MO setting I get: **** Warning!!: The largest alpha MO ...
5
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106 views

Ab initio MD simulations in VASP

I'm not sure if this is an appropriate question for Chemistry.SE, but I'm taking a stab. I'm running ab initio MD calculations in VASP and I'm trying to optimize different input tags. On the VASP ...
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51 views

Paper Data Replication

I read a paper recently - Here. I found the concept of Electride materials very interesting and wanted to mess around with them myself. I tried to replicate the partial electron density plots shown in ...
4
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77 views

Signs of Exchange and Correlation Potentials

The exchange and correlation potentials refer to those defined in density functional theory. (See also http://en.wikipedia.org/wiki/Local-density_approximation) Define the exchange potential as $V_{x}...
3
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19 views

How to do RPA (Random Phase Approximation) in VASP?

I'm new to VASP and as such don't know much of its intricacies yet. I want to find out the interlayer binding energy of a given molecule and to do that I already opted for the use of different ...
3
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54 views

Why can we know a materials properties by knowing its ground state at 0K - DFT

I have had this doubt ever since I was introduced to DFT. For what I gathered whatever results you obtained with DFT (by using VASP, quantum expresso or any other software) you can say those ...
3
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128 views

calculate SPE using dummy/ghost atoms in NWChem

I have been making some failed attempts to calculate interaction energy of 2 monomers using a dummy/ghost atom in NWChem6.5. The code I was using to calculate the interaction energy is: ...
3
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356 views

Semi-numeric or analytic Hessian for DFT (GAMESS)

I'm trying to understand what parameter in the $FORCE group is better to use in computing vibrational frequencies (NVIB=2) of ...
2
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65 views

High errors in frontier orbital energy calculation using DFT

In a recent paper by Faber et . al., Mean Absolute Error and DFT (B3LYP) error (relative to the experiments) for 9 properties of QM9 dataset molecules has been reported. \begin{equation} \begin{array}...
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34 views

How to find a full electron basis set that approximate a given ECP basis set?

In computational chemistry of transition metals, there are many popular basis sets, from pople+LANL2DZ mixed basis sets, to Ahlrich and Karlsruhe basis sets like def-SVPD, def2-TZVPPD. Often the ECP ...
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47 views

How to account for solvation of a molecule explicitly in quantum calculation?

I'm looking for a way to account for hydrogen bonds formed with my molecule in aqueous solution explicitly in DFT calculation. I'll do it in order to compare stability of two structures in water. As ...
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110 views

DFT Exchange-Correlation Two Electron Integrals

Are there any electronic structure programs that print the exchange-correlation (XC) integrals for a given DFT functional? These integrals are of the form $$\langle pq|w|rs\rangle$$ where $w$ is an XC ...
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133 views

Natural orbital population analysis in Gaussian

Within (restricted) density functional theory and Hartree-Fock, respectively the Kohn-Sham orbitals and spin orbitals are the natural orbitals, with occupation numbers either 2 or 0. As I understood, ...
2
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75 views

Q-chem equivalent solvent settings for Gaussian NMR ab inito methods

I'm attempting to use Q-Chem 5.0 to replicate CHESHIRE-esque http://cheshirenmr.info/ ab initio calculations of chemical shift values. Unfortunately Gaussian seems to be the predominant tool in this ...
2
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27 views

How to calculate the magnetic exchange coupling in a charged radical complex?

I have a neutral complex with two magnetic centers. For this case it is easy to calculate the exchange coupling as the broken symmetry state is converged properly. But when I am making the complex ...
2
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34 views

Determining global minimum structures for ion-water clusters

What is the best way to find the global minimum structure(or get close to it) for an ion and N waters? (i.e. ion cluster in vacuum) For example, consider Flouride ion cluster with N=5 waters. I want ...
2
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95 views

What exactly does setting the net charge in a DFT calculation do?

In the implementations of DFT using Gaussian basis sets, it is common to set the net charge. What exactly does this do? The Gaussian (program) manual, for instance, says that it introduces a ...
2
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70 views

DFT: Can the calculated enthalpy of two systems that aren't isoelectronic be compared?

As a simple example, say I wish to calculate the product of a reaction between methyl iodide and triethylamine, then compare it with the product of benzyl iodide and triethylamine. My goal is to ...
2
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377 views

Units on rate constants from transition state theory and DFT

I am using density functional theory (DFT) to compute the energy profile and, by extension, kinetic parameters for a catalytic process. I know that the rate constant from transition state theory (TST) ...
2
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246 views

PAW vs USPP: Pseudopotentials in commercial DFT codes

What is the difference between USPP (ultra-soft pseudopotential) and PAW (projector augmented wave) in commercial DFT codes?
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314 views

Which Basis Set is suitable For Mercury-complex in DFT calculations?

Which Basis Set is suitable For Mercury-complex in DFT calculations? Please provide the answers with any journal reference.
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228 views

How to model iso-surface of molecular orbitals of singlet and triplet excited states

I've modelled the iso-surface of the highest occupied molecular orbital of a molecule with DFT in Gaussian.If I were to model the iso-surface of the molecular orbital of the singlet and triplet ...
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39 views

Which DFT functional is best for predicting macroscopic properties of molecular liquids?

Which DFT functional (KS-DFT, to be more specific) performs best at predicting macroscopic properties (density, surface tension, boiling point, relative permittivity etc.) of molecular liquids (...
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56 views

How is occupation number of lowest unoccupied natural orbital defined?

I have run some calculations to analyse the occupation of natural orbitals. Since it is needed to run in triplet state, I get two orbitals with occupation number 1. Now, which orbital occupation ...
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24 views

Relationship between the 2nd theorem of Hohenberg and Kohn and the Variational Principle

In Density Functional Theory, the 2nd theorem of Hohenberg and Kohn states: The electron density of the system that minimises the ground-state energy is the exact electron density of the system. ...
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33 views

How does MP2 level of theory affect the natural orbital picture of the system?

I have performed CASSCF calculations for a series of molecules with varying input orbitals. I have used UNO, UHF, ROHF and MP2 based natural orbitals to perform the CASSCF calculations. For my system ...
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88 views

How do I get a value of the Gibbs energy of formation at 0 K and 0 bar?

The standard Gibbs free energy of formation for copper(II) oxide, $\ce{CuO}$, is $\Delta_\mathrm fG (\pu{298.15 K},\pu{1 bar}) = \pu{-129.7 kJ mol-1}$. How can I get $\Delta_\mathrm fG (\pu{0 K},\pu{...
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525 views

Calculation correct binding energy for a system?

I am doing DFT calculations (VASP) to calculate correct binding energy for an amorphous silica surface and silver adatoms. From MD simulation, we found that a binding energy of 0.2 eV gives results ...
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33 views

Is There an Acceptable Potential Which Can Represent the Interaction between Finite-sized Ions?

The question is as mentioned in the title. Take for example the interaction between $\ce{Ar^+}$ and $\ce{Ar^+}$. In general, is there an acceptable potential which can represent the interaction ...
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19 views

Convert to NASA polynomial format for chemical kinetic calculations

I have calculated thermodynamic properties of a metal oxide through DFT calculations, I want to convert it to NASA polynomial format and use those thermodynamic properties along with rate constants ...
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84 views

What is meaning of LAV2P basis set?

I am working on energy optimization of molecular structure using DFT with Schrödinger software and I found that job is running on LAV2P basis set. I want to know what is the meaning of this basis set ...
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30 views

How one can calculate Si-O-Ca/Mg valence angle energy?

I want to perform the relaxed scan (or relaxed surface scan) for the valence angle energy of Si–O–Ca, Si–O–Mg, Al–O–Ca, and Al–O–Mg. I will use DFT (ORCA), probably B3LYP and triple zeta basis set (...
0
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49 views

Getting radial Kohn-Sham orbital from the output of an electronic structure code using gaussian basis sets

As we know that in solving the Schrodinger equation (Kohn-Sham equation), we expand the wavefunction in terms of some basis sets and them optimize the energy (the expectation value of Hamiltonian) by ...
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19 views

Is the exchange interaction always less in value than coulomb interaction? (Absolute values of both.)

I wonder for 2 electron interactions whether exchange interaction (K) is always less than the coulomb interaction(J) value in all cases (HF or DFT) or there is no such necessity? Does it depend on the ...