Questions tagged [density-functional-theory]

Density functional theory (DFT) is a quantum mechanical model used to estimate the electronic structure of molecules and condensed matter. In broad terms, DFT works by treating all the electrons in the system as a single electron density, and computing physical quantities of interest as functionals of that electron density. (from Physics.SE)

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Generate Surface with CubeFile from Gaussian in VMD or other free programm

I asked a question before, about how to save a mapped surface from GaussView. I don't get an answer, so I get much deeper in my internet research about it again. Now I want to try to create a mapped ...
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Is this approximate equivalence table between Pople's basis sets and Jensen's DFT attuned polarization consistent basis sets (pcseg-n) correct?

I have some calculations results I runned previously using Pople's basis sets, mostly 6-311+G(d), under Gaussian09. These days I read some texts on Frank Jensen's family of polarization consistent, ...
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How to extract a image (vector graphic) from a surface EPS plot with GaussView?

I am quiet new to this field of chemistry. I work with GaussView and I created a surface plot for my molecule with the cube and surface generator. This works very well. Now I like to save and copy ...
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Is Tkatchenko's MBD-NL method self-consistent?

I have a question regarding Tkatchenko's [1] new nonlocal many-body dispersion method (MBD-NL). Does anyone know if it's a self-consistent method? I read this paper many times but I'm still not sure. ...
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Can density functional approximations including dispersion correction perform worse than without it?

I am trying correlate some experimental properties of a molecule to its calculated equilibrium geometry. To do so, I calculated the geometry and energy of some conformers. Now, I obtain mixed results ...
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Can you explain DFT and TDDFT functioning (math aside)? [closed]

I have been recently reading a lot on the quantum mechanical theory regarding Density Functional Theory, DFT, and Time Dependent Density Functional Theory, TDDFT (Oscillatory and Rotatory Strengths in ...
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102 views

High errors in frontier orbital energy calculation using DFT

In a recent paper by Faber et . al., Mean Absolute Error and DFT (B3LYP) error (relative to the experiments) for 9 properties of QM9 dataset molecules has been reported. \begin{equation} \begin{array}...
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Convert to NASA polynomial format for chemical kinetic calculations

I have calculated thermodynamic properties of a metal oxide through DFT calculations, I want to convert it to NASA polynomial format and use those thermodynamic properties along with rate constants ...
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Question about the setting of DFT (Density Function Theory)-NEB (Nudged Elastic Band) calculation

I'm attempting to calculate Mg ion vacancy migration inside Pyrope unit cell. System has total 159 atoms, beginning and end geometry is optimized. For intermediate image, I'm using one coordinate that ...
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How to do RPA (Random Phase Approximation) in VASP?

I'm new to VASP and as such don't know much of its intricacies yet. I want to find out the interlayer binding energy of a given molecule and to do that I already opted for the use of different ...
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On mathematics behind molecular orbital energies

When explaining the mathematics behind calculating molecular orbital energy , namely HOMO and LUMO energies, using quantum chemistry, Chainer Chemistry documentation states that From mathematical ...
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How to find a full electron basis set that approximate a given ECP basis set?

In computational chemistry of transition metals, there are many popular basis sets, from pople+LANL2DZ mixed basis sets, to Ahlrich and Karlsruhe basis sets like def-SVPD, def2-TZVPPD. Often the ECP ...
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85 views

Global reactivity parameters from open shell DFT calculations using Koopman's theorem

Koopmans' theorem is a useful approach to calculate the global reactivity parameters from the HOMO-LUMO energies. My question is, does it apply to the open-shell systems where we get two sets of ...
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Which DFT functional is best for predicting macroscopic properties of molecular liquids?

Which DFT functional (KS-DFT, to be more specific) performs best at predicting macroscopic properties (density, surface tension, boiling point, relative permittivity etc.) of molecular liquids (...
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Finding mathematically the ground state density in DFT

To find the ground state density in DFT, you set the following Lagrangian: $$L = E[\rho(\vec r)] - \mu\left(\int \rho(\vec r) \mathrm{d}\vec r - N\right)$$ While minimising with respect to the ...
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Spin in meta-GGAs

In density functional theory (DFT) we know that the local density approximation (LDA) leads to an exchange-correlation energy kernel of the form: $$E_\mathrm{xc}^\mathrm{LDA} =\int e_\mathrm{xc}\left(...
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Interpretation of TD-DFT results

For the first time I'm doing TD-DFT calculations (wB97XD functional) in Gaussian 09 for an open-shell system and the results look like the hell of a mess for me. The molecule is rather big, so I ...
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How to use dispersion correction with TPSSh in Gaussian 16?

A colleague of mine suggested to use TPSSh as a functional. Since I am applying Grimme's D3 dispersion correction by default, I was surprised that it wasn't implemented in the standard density ...
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227 views

DFT vs. MP2 for stacked dimer

Recently, I looked at these two papers analyzing the excited-state properties of modified DNA bases (2-aminopurine and 8-vinyl-A) and how they are influenced by stacking with natural nucleobases: ...
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How can I obtain the wave function of the dihydrogen system, by hand using Self Consistent Field DFT calculations? [duplicate]

After doing some energy calculations for the $\ce{H2}$ system in Gaussian, using ωB97X-D/STO-3G level of theory, and generating a .wfn file, I wanted to understand better how the computer does ...
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221 views

How to calculate the amount charge transfer from a natural population analysis?

I am trying to reproduce the quantity referred to as the degree of charge transfer reported in this publication by Zhu et al. [Ref. 1] for the F4-TCNQ molecule. I am interested in section 3.2 in the ...
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98 views

How can I find the smaller symmetric structure from big crystal unit cell?

I have Pyrope (Mg3Al2(SiO4)3) crystal structure, downloaded from materialsproject: https://materialsproject.org/materials/mp-6073/# It appeared as triclinic cell, but if you download CIF file and ...
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How to account for solvation of a molecule explicitly in quantum calculation?

I'm looking for a way to account for hydrogen bonds formed with my molecule in aqueous solution explicitly in DFT calculation. I'll do it in order to compare stability of two structures in water. As ...
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What is meaning of LAV2P basis set?

I am working on energy optimization of molecular structure using DFT with Schrödinger software and I found that job is running on LAV2P basis set. I want to know what is the meaning of this basis set ...
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Can I compare DFT calculations with different grids?

When doing DFT calculations, some integrations are commonly done numerically on grids. [In fact, more than a single grid may be used at the same time for different integrals, e.g. approximations such ...
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How one can calculate Si-O-Ca/Mg valence angle energy?

I want to perform the relaxed scan (or relaxed surface scan) for the valence angle energy of Si–O–Ca, Si–O–Mg, Al–O–Ca, and Al–O–Mg. I will use DFT (ORCA), probably B3LYP and triple zeta basis set (...
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Guide to DFT functionals [duplicate]

Having recently begun studying Quantum and computational chemistry in depth... I am looking for a manual, text, or guide of any form that could explain the basic formulations and potential of the ...
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Limitations of extremes for the exchange-correlation functional - DFT

In DFT the exchange-correlation function is critical for the correct description of the system. I have a question about the applications and shortcoming of some functionals. LDA delocalizes electrons ...
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51 views

Getting radial Kohn-Sham orbital from the output of an electronic structure code using gaussian basis sets

As we know that in solving the Schrodinger equation (Kohn-Sham equation), we expand the wavefunction in terms of some basis sets and them optimize the energy (the expectation value of Hamiltonian) by ...
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454 views

Hartree Fock and DFT - Exchange term

this might be a stupid question but I am really confused at the moment. I'm currently preparing for an exam in computational chemistry. In the lecture I noted always down that the exchange term (Pauli-...
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Is there an easy explanation of MP2 calculation [closed]

for my master thesis I calculated some ring strains with MP2 calculation. It was not hard to calculate these things but I'm struggling to understand what the theory is about. Now I'm defending my work ...
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What's the most complete basis set for calculating chemical shifts with DFT?

I'm trying to benchmark some NMR chemical shifts. The literature suggests that the pcS-4 basis set will be the most accurate. I was wondering if there were any basis sets that are more complete than ...
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DFT Exchange-Correlation Two Electron Integrals

Are there any electronic structure programs that print the exchange-correlation (XC) integrals for a given DFT functional? These integrals are of the form $$\langle pq|w|rs\rangle$$ where $w$ is an XC ...
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Is the exchange interaction always less in value than coulomb interaction? (Absolute values of both.)

I wonder for 2 electron interactions whether exchange interaction (K) is always less than the coulomb interaction(J) value in all cases (HF or DFT) or there is no such necessity? Does it depend on the ...
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195 views

How to know about radical character of a diradical molecule?

I understand that the radical character is quantified by the occupation number of the lowest unoccupied natural orbital obtained from UHF calculations or from CASSCF calculations. My issue is that I ...
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575 views

How to define custom force in quantum chemistry packages?

I don't know if this is really applicable but I want to add a custom force (say, $F(x,y,z)$) to some atoms in my geometry optimization. Is there any way to add such forces to the DFT or molecular ...
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Reference states for molecular orbital energies in DFT calculations

When doing a population analysis using density functional theory (specifically as implemented in Gaussian), what are the orbital energies (i.e. alpha and beta eigenvalues) with respect to? If I have ...
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161 views

Estimating stability and mean life of anomalous tautomers

A pair of bases in the DNA, say, A-T, have a tautomerized form A*-T* (resulting from switching the sides of both protons along the hydrogen bridges). I have studied how, by means of DFT computations, ...
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PBE vs. PBEPBE functional

I've found good explanation what the PBE functional is. However, sometimes I see PBEPBE and I cannot find any good information about what this means and how it's different from PBE. The Gaussian ...
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490 views

Do modern dispersion-corrected DFT methods give more accurate molecular geometries?

I was discussing with a colleague the use of modern dispersion-corrected density functionals. I take it almost as a given that the methods generally produce "better" (for some definition) geometries, ...
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Why can we know a materials properties by knowing its ground state at 0K - DFT

I have had this doubt ever since I was introduced to DFT. For what I gathered whatever results you obtained with DFT (by using VASP, quantum expresso or any other software) you can say those ...
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Strange “far out” orbitals in HF and DFT calculations. Why do they occur?

I calculated some orbitals and I get quite strange results with orbital geometries I wouldn't expect from MO theory. A more experienced colleague just said: "That's always the case with big basis sets,...
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Ab initio MD simulations in VASP

I'm not sure if this is an appropriate question for Chemistry.SE, but I'm taking a stab. I'm running ab initio MD calculations in VASP and I'm trying to optimize different input tags. On the VASP ...
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155 views

Correlation energy in quantum chemistry

In density functional theory (DFT) there is classic Coulomb energy and non-classic correlation energy. But what is difference between them? In books these energies are explained very similarly. Both ...
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Natural orbital population analysis in Gaussian

Within (restricted) density functional theory and Hartree-Fock, respectively the Kohn-Sham orbitals and spin orbitals are the natural orbitals, with occupation numbers either 2 or 0. As I understood, ...
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Calculation of rate constant for bimolecular reaction from Gaussian DFT calculations

I am working with a bimolecular reaction for which I have computed the energy profile. I have output files for TS and reactants which I intend to use for rate constant calculations. From TST we have: ...
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How is occupation number of lowest unoccupied natural orbital defined?

I have run some calculations to analyse the occupation of natural orbitals. Since it is needed to run in triplet state, I get two orbitals with occupation number 1. Now, which orbital occupation ...
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309 views

What is density in density functional theory?

This may be dumb question. Please bear with me. Density functional theory (DFT) is a successful theory for electronic structure calculations of materials. In DFT, electron density is the fundamental ...
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Finding the weighted parameters of the vertex adjacency matrix for a derivative of azulene

In my last question ( Numbering in a derivative of azulene ), I asked about the numbered of a molecule in order to find the Vertex Adjacency Matrix (VAM) of the same molecule. To explain my question ...
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Relationship between the 2nd theorem of Hohenberg and Kohn and the Variational Principle

In Density Functional Theory, the 2nd theorem of Hohenberg and Kohn states: The electron density of the system that minimises the ground-state energy is the exact electron density of the system. ...