Before I begin I know that what I am asking will deform the M.O but for what I am doing this for that is okay if it is only around the atoms and bonds.
My question is in JMOL is there anyway to display the isosurface of the molecular orbital and have it leave a gap around the molecule. I am going to a conference soon and need to print a model of a cyclic molecule. I would like to be able to "mount" the MO to the molecule using tiny magnets at certain points so I may dislodge the two phases and show the structure of the molecule. Yes using two different models (one with MOs and one without) is possible but not preferred.
I have explored isosurface command and different syntax and have not been able to find anything that may be of help.