As far as I know, an oxoanion just refers to an anion which has oxygen covalently bonded to the central atom; the central atom can be pretty much anything apart from the Group 1 and 2 metals, since the only oxygen compounds those form are ionic oxides/peroxides/superoxides. For the 3d transition metals, you have $\ce{VO3^-}$ (vanadate(V)), $\ce{CrO4^{2-}}$ (chromate(VI)), $\ce{MnO4-}$ (manganate(VII)), and $\ce{FeO4^{2-}}$ (ferrate(VI)), amongst others.
I would not recommend reading too much into the nomenclature, because a lot of it is just what chemists are comfortable with after using for a long time - it's like a language that you just get more familiar with over time. But there are some general rules. The 'per...ate' name, such as perchlorate $\ce{ClO4-}$, implies a higher oxidation state than the normal '...ate' compound, which is chlorate $\ce{ClO3-}$ in this case. For chlorine, only certain oxidation states are available, namely the -1, 0, +1, +3, +5 and +7 oxidation states. Apart from 0, which occurs in diatomic chlorine $\ce{Cl2}$, you will notice that these are in increments of 2 - which means that you can generate the whole list of chlorine anions by adding one more oxygen, but keeping the charge of the anion constant: $\ce{Cl-}$, $\ce{ClO-}$, $\ce{ClO2-}$, $\ce{ClO3-}$, $\ce{ClO4-}$. This tendency to form compounds 2 oxidation states apart is very pronounced for the p-block elements, i.e. Group 15, 16 and 17.
However, for d-block elements such as $\ce{Mn}$, this isn't the case because single d electrons are easily lost and gained. So after permanganate, $\ce{MnO4-}$, which features $\ce{Mn}$ in the +7 oxidation state, the oxoanion with the next highest oxidation state is the manganate ion $\ce{MnO4^2-}$ which has $\ce{Mn}$ in the +6 oxidation state. (As far as I know the ion $\ce{MnO2-}$ is not called "manganate".)