I have a molecule extracted from the PDB. When I load it into Avogadro, it has some misplaced bond types. I want to correct this, by setting the bond type (single, double) for these bonds. How can I do this?
As discussed in the Avogadro website about the draw tool you can change the bond order:
- By clicking on the bond - the bond order will go from single, to double, to triple, back to single.
- By setting the bond order and "drawing over" the bond. The new setting (e.g., double) will replace the existing bond.