So is the point of contention here "how does the standard state for the activities relate to the standard state for the Gibbs free energy change"?
To see how choice of standard state for an activity relates to the standard state chosen for the chemical potential, write the equation as
$$\mu_i = \mu_i^\circ + R T \ln a_i = \mu_i^\circ + R T \ln \frac{\gamma_i c_i}{c_i^\circ}$$
where the standard states are consistent.The standard state is being defined so that
when $\gamma_i c_i = c_i^\circ$, $\mu_i = \mu_i^\circ$. If we're using molarities, we can choose $c_i^\circ = 1\ M$.
Now suppose you want to define a standard state that's different from 1 in the units you're using for concentration; e. g, suppose we have a reaction that includes $\rm H^+$ and we want to define the biological standard state ($^\oplus$) as $c_{\rm H^+}^\oplus = 10^{-7}\ M = 10^{-7} c_{\rm H^+}^\circ$, while using molarities as our concentration unit.
We can compute a new chemical potential:
$$\begin{array}{rcl}\mu_{\rm H^+} &=& \mu_{\rm H^+}^\circ + R T \ln \dfrac{\gamma_i c_{\rm H^+}}{c_{\rm H^+}^\oplus}\\
&=& \mu_{\rm H^+}^\circ + R T \ln \dfrac{\gamma_i c_{\rm H^+}}{10^{-7} c_{\rm H^+}^\circ}\\
&=& (\mu_{\rm H^+}^\circ + 7 R T\ln 10) + R T \ln \dfrac{\gamma_i c_{\rm H^+}}{c_{\rm H^+}^\circ}\\
&=& \mu_{\rm H^+}^\oplus + R T \ln \dfrac{\gamma_i c_{\rm H^+}}{c_{\rm H^+}^\circ}\\
&=& \mu_{\rm H^+}^\oplus + R T \ln a_{\rm H^+}
\end{array}$$
Now at unit activity $\gamma_i c_i = c_i^\circ$ and $\mu_i = \mu_i^\oplus$. Your chemical potential (and your Gibbs free energy changes) are now defined in terms of this new standard state. And note that the chemical potential at this new standard state ($\mu_{\rm H^+}^\oplus$) is indeed temperature dependent. To convert between the two standard state Gibbs free energies in this particular case,
$$\Delta G^\oplus = \Delta G^\circ + 7 \nu R T \ln 10$$
where $\nu$ is the stoichiometric coefficient of $\rm H^+$ in the reaction.
TL;DR: The standard state you choose for the concentration at unit activity becomes the standard state for the standard state Gibbs free energy change.