This is the Raman spectrum of water. There is $\pu{1635 cm-1}$ Raman peak corresponding to $\ce{HOH}$ and $\pu{3410 cm-1}$ Raman peak corresponding to $\ce{OH}$. But why is there general nonzero background in intensity? What caused it?

This is taken using 532nm wavelength raman system:

enter image description here

This is taken using 785nm wavelength raman system up to 2750 cm-1 only (versus 4000 cm-1 of the first spectrum):

enter image description here

In the above picture. Why is the background dimishing to zero towards 2750 cm-1. My guess is that as wavelength gets higher, water absorbs more. But can it absorb the noise too?

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    $\begingroup$ All detectors have noise. All spectrometers aren’t perfect. There is always background in every measurement. $\endgroup$ – Jon Custer Aug 10 '19 at 2:14
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    $\begingroup$ You need to keep the spectrometer and the detector separate in your mind. It is a quite broad question to determine all the possible noise sources in the whole system. But, consider a high resolution spectrometer- you only pass a very narrow frequency range to the detector. So, not many photons. But the dark counts are whatever they are, so your signal to noise is low. $\endgroup$ – Jon Custer Aug 10 '19 at 2:39
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    $\begingroup$ You just put side by side pictures taken with different source and detector. Ergo the absolute values at y do not tell info. Fluorescence is present in Raman spectra and is difficult to remove as for it requires the sample to be in, it has no physical blank to run a background. $\endgroup$ – Alchimista Aug 10 '19 at 9:23
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    $\begingroup$ 535nm principally scatters a factor 4.7 more than 785, not only Raman scattering but also elastic Raleigh scattering, which is one of your major noise sources. Also the second raman with the NIR source is perhaps a modern FT Raman. And the NIR source makes less flourescence, which is the worst noise source of all in most cases. $\endgroup$ – Karl Aug 10 '19 at 17:05
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    $\begingroup$ @Samzun That 2nd device is a handheld detector which is not designed to output high-quality spectra. It isn't a general-purpose spectrometer. It's used to detect specific compounds, probably by pattern matching the data to a reference library. So it just has to be good enough for that purpose. You have to make a lot of compromises to shrink a spectrometer to that size, and the loss of intensity towards 3000 cm-1 may well be one of those compromises. $\endgroup$ – AndyW Aug 12 '19 at 14:17

This answer is based on the educated guess that the green excitation Raman spectrum was acquired with a dispersive Raman instrument*.

But why is there general nonzero background in intensity? What caused it?

For any real-life instrumentation, you should never assume to measure 0 signal for 0 analyte concentration (see also Does a calibration curve of absorbance vs concentration need to pass exactly through the origin?) nor expect the baseline to be at zero unless corrected for, even if there really were no Raman scattering outside those two bands, the instrument and/or sample preparation procedures (electronics, optics, masking, cross-sensitivity, ...) will often lead to some non-zero signal.

The CCD in the spectrograph has a so-called dark current. So the raw signal you observe is dark current plus photon signal. Dark current is influenced by settings of the CCD (you trade off sensitivity and dark current) and by temperature.

The constant part of the dark current shouldn't trouble you too much: you can measure and then subtract it (which is in fact what spectrometer software does where you see the baseline at zero). However, as subtracting spectra sums their noise** (error propagation). As Raman measurements typcially suffer from low signal-to-noise-ratio, you may want to avoid this, so Raman spectrometer software usually either outputs raw spectra or offers you the choice whether you want to subtract the dark spectra.

For SNR of Raman spectra, you'll have to take into account shot noise (Photon noise): the noise is directly proportional to the signal intensity, and that includes optical background such as fluorescence or elastically scattered or reflected light as well as your Raman signal. (And then come the other sources of noise such as flicker noise and the various sources of noise related to your application).

For a thorough discussion of the noise properties of Raman spectrometers, there's a whole chaper of McCreery: Raman Spectroscopy for Chemical Analysis, ISBN: 978-0-471-23187-5 on the topic (for FT instruments, see Zhao & McCreery: Multichannel FT-Raman Spectroscopy: Noise Analysis and Performance Assessment, ApplSpec, 1687 - 1697, 1997.)

About the 785 measurement in comparison:

The green excitation y-axis looks like raw counts (the data itself would reveal more: raw counts are usually integer numbers). In contrast the red spectrum's y-axis goes from 0 to slightly above 1.0. Which means that some transformations have been done (which is impossible to say from the data alone - you'll have to talk to the manufacturer what they do).

 water absorption

Absorbance of in the range below 1100 nm is < 0.2/cm. So yes, you loose about 1/3 of the intensity through 5 mm water and back - but you can avoid that by focusing not as deep into the water.
What hurts your signal more is that the quantum efficiency down there is pretty awful for many CCDs (around 10 %, there's a reason why their spectral range ends in the mid of the -CH stretching vibrations).

* A rather safe guess, as FT instruments for such short wavelength AFAIK exist at the moment only as "home-built" instruments developed in some research facilities - whoever uses one of those is going to be fully aware that they are using something special.

** more precisely: the variances of independent random variables are additive

  • $\begingroup$ Do you think I should get this 785nm model shopstellarnet.com/… or this 532nm model enspectr.com/portfolio/enspectr-r532 ? I just want to buy one for learning molecular structure.. which would you buy if you were just a beginner? $\endgroup$ – Samzun Aug 12 '19 at 13:43
  • $\begingroup$ btw.. when you said "absorbance of in the range below 1100 nm is < 0.2/cm". Did you mean by below is like 900nm or below is like 1200nm? I was asking water absorbance between 800nm to 1050nm. how many percentage is the absorbance through 5mm of water using 785nm laser? I want to study water hence can't get 532nm off my mind. Thanks so much. $\endgroup$ – Samzun Aug 12 '19 at 13:55
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    $\begingroup$ You cannot conclude too much from the 500 mW vs. 15 mW: λ⁴ dependency is one thing, quantum efficiency and the losses in the optical path are another thing. You'll have to measure to find out how well the instruments do. $\endgroup$ – cbeleites unhappy with SX Aug 12 '19 at 14:30
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    $\begingroup$ Samzun: From what you have written so far, the question which Raman spectrometer is best for you cannot be answered. I also have the impression that you need a better understanding of the instrumentation basics and tradeoffs here. I feel that thisis leaving the region of what is generally useful to the public. As I do advise (and teach) professionally on these topics, you can contact me (see profile) if you are interested in getting professional help with the decisions for purchasing an instrument. Otherwise, reading & understanding the literature I've linked and working through a list of the $\endgroup$ – cbeleites unhappy with SX Aug 12 '19 at 17:45
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    $\begingroup$ ...questions that need to be answered in order to get to a good decision (both in my answers and in the comments of others!) should get you a good understanding of what to look for. $\endgroup$ – cbeleites unhappy with SX Aug 12 '19 at 17:46

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