PREFACE: I am no expert on this topic. My questions at the bottom may be off base. I have some experience with symmetry-adapted perturbation theory (SAPT) when it comes to analyzing intermolecular interactions. The total interaction energy of a system can be quantified in four different energy components including exchange, induction, electrostatics, and dispersion.
Natural Bond Orbital (NBO) analyses translate the complex quantum-mechanical wavefunction into a more tangible Lewis-dot-like formalism (natural Lewis structure). The introduction of the following series of equations has been largely influenced by the presentation of Weinhold and Landis (2012).
Important Terms:
- Lewis-type NBOs - filled 'donor' orbitals (e.g. $\sigma_{AB}, \sigma_{CD}, \cdots$)
- Non-Lewis-type NBOs - vacant 'acceptor' orbitals (e.g. $\sigma_{AB}^{\ast}, \sigma_{CD}^{\ast}, \cdots$)
Lewis and non-Lewis NBOs mix:
Consider a wavefunction, $\Psi$, comprised of two components, a known natural Lewis structure wavefunction, $\Psi^{(L)}$, and a non-Lewis correction wavefunction, $\Psi^{(NL)}$, such that
$$\Psi = \Psi^{(L)} + \Psi^{(NL)}$$
The natural Lewis structure wavefunction is simply a fictitious representation of an exact physical system where resonance effects are non-existent.
Now imagine a corresponding Hamiltonian, $\hat{\mathcal{H}}$, which can also be treated as an additive scheme with corresponding components to each piece of the wavefunction:
$$\hat{\mathcal{H}} = \hat{\mathcal{H}}^{(L)} + \hat{\mathcal{H}}^{(NL)}$$
Given these two equations and the form of the Schrödinger Equation, $\hat{\mathcal{H}}\Psi=E\Psi$, there must also exist a similar construction of the energy of the system, $E$, such that
$$E = E^{(L)} + E^{(NL)}$$
These three equations provide the foundation for a "systematic 'perturbation theory' analysis", where $\hat{\mathcal{H}}^{(L)}$ is the unperturbed Hamiltonian with a corresponding (known) eigenfunction, $\Psi^{(L)}$, and energy eigenvalue $E^{(L)}$. Note that $\Psi^{(L)}$ is not only known, but it is related to an 'idealized single reference picture' in which each Lewis-type NBO has exact double occupancy for closed shell systems.
As with Hartree-Fock, the limit of a single-reference method can be reached by an infinite expansion of a basis ($\Omega)$ in the one-electron eigenvalue equation. For the natural Lewis structure, this can be written as
$$h^{(0)} \Omega_i^{(L)} = \varepsilon_i^{(L)}\Omega_i^{(L)} \qquad \mathrm{where~~} i = 1,2,\cdots,n$$
where $\varepsilon_i^{(L)}$ are orbital energies of Lewis-type NBOs. Because $h^{(0)}$ also contains the non-Lewis contributions such that
$$h^{(0)} \Omega_j^{(NL)} = \varepsilon_j^{(NL)}\Omega_j^{(NL)} \qquad \mathrm{where~~} j = n+1,\cdots$$
Because natural Lewis structures contain zero resonance, the donor (Lewis-type NBOs) and acceptor (non-Lewis-type NBOs) orbitals do not interact due to their orthogonal nature
$$\int \Omega_i^{(L)\ast}h^{(0)}\Omega_j^{(NL)}d\tau=0 \qquad \mathrm{for~all~~} i,j$$
However, a real-world $1e^-$ Hamiltonian operator, $F$ (i.e. Fock operator, Kohn-Sham operator, etc.), will have donor-acceptor interactions such that
$$F_{ij} = \int \Omega_i^{(L)\ast}F\Omega_j^{(NL)}d\tau\neq0$$
leading to mixing (delocalization) which connects the non-Lewis type NBOs with Lewis-type NBOs.
Second-Order Perturbative Treatment of Delocalizations
This mixing of the donor and acceptor orbitals can be treated with second-order perturbation theory. Even though $\Psi^{(L)}$ ignores interactions with non-Lewis acceptors, it contains more than 99% of the total electron density, $\rho_L$, offering a good starting point for an unperturbed wavefunction.
The mixing of donors and acceptors lead to an overall energy lowering ("stabilization"), a quantum mechanical phenomenon. Consider two interacting orbitals, as schematized below. One is doubly-occupied with a lone electron pair, $n$, and the other is an unoccupied antibonding orbital (here a $\pi^{\ast}$ orbital).
$\hskip1in$
The overlap of the lone electron pair, $n$, with the vacant antibonding orbital, $\pi^{\ast}$ causes an change in energy of the lower occupied orbital, $x$. This change in energy between the non-mixing orbital with $n$ and the mixing orbital $x$ (denoted as $\Delta E$) is referred to as 'stabilization energy' of the electron delocalization. This energy (in kcal mol$^{-1}$) is determined via the following equation:
$$\Delta E_{ij}^{(2)} = \frac{-q_i \left| F_{ij} \right|^2}{\left(\varepsilon_j^{(NL)}-\varepsilon_i^{(L)}\right)}$$
where $\varepsilon_j^{(NL)}$ is the energy of the non-Lewis NBO (i.e. $\pi^{\ast}$), $\varepsilon_i^{(L)}$ is the energy of the orbital occupied by $n$, and $q_i$ is the occupancy of the orbital ($q=2$ in the above figure). The 'stabilization energy' $\Delta E_{ij}^{(2)}$ as determined by second-order perturbation treatments is commonly abbreviated as $E(2)$.
Recap:
So we have introduced (albeit very poorly) the concept of a separable wavefunction into natural Lewis and non-Lewis type formalisms. These two states mix, allowing for delocalization of electrons, a phenomenon which leads to lower energy states. This energy lowering is commonly called 'stabilization energy'.
Physical Significance?
Unfortunately, after such an introduction, I am still at a loss as to what all of this really means. As a theoretical chemist (I'm a chemist, theoretically speaking...), I am interested in the physical significance of this type of quantity [$E(2)$]. However, I am unsure how significant this type of value truly is. Do these delocalizations (energy stabilizations) lead to an overall lower energy of the system? Would a system with more of these delocalizations be expected to lie lower in energy than a comparable system without delocalizations? Can that type of correlation be made?
I guess I just do not see any usefulness in computing these $E(2)$ values for any reason because, while it may tell you that particular donor-acceptor interactions lead to this energy lowering, it doesn't offer much more than that. What am I missing here?
TL;DR - What can I use $\mathbf{E(2)}$ values for?