A recent question (on $\ce{CI}$ v $\ce{Cl}$) reminded of this question: are there any real (as opposed to contrived) formulae which would be the same if case was ignored?
One certain example is $\ce{Co}$, Cobalt, and $\ce{CO}$, Carbon Monoxide. Of course, confusing Cobalt and Carbon Monoxide is rather unlikely.
In my search for others, the best example I could find was $\ce{BaS}$, Barium Sulphide, and $\ce{BAs}$, Boron Arsenide. Are these real substances and is the stoichiometry just $1:1$? I had trouble verifying that.
Are there any more interesting examples?
One real example that I saw once was a poster in a university chemistry lab showing some complex organic molecules. $\ce{Ac}$ appeared at many points but it seemed very unlikely that these compounds contained Actinium. I then noticed $\ce{Me}$ and $\ce{Et}$ and guessed that they were organic units e.g. methyl and ethyl so $\ce{Ac}$ may have been acetyl.