The tag has no wiki summary.

learn more… | top users | synonyms

2
votes
1answer
31 views

Conformational analysis determining forces

So the determining forces in the conformational analysis (what will be the more stable state and what will be the more excited state) according to my textbook are: Steric interaction Electron ...
4
votes
1answer
75 views

IBrF2 - van der Waals repulsions - and number of unique bond angles

I understand that the molecule $\ce{IBrF2}$ is T-shaped, with three ligand atoms and two non-bonding pairs. However, how many unique bond angles can this molecule exhibit? My professor argues for ...
3
votes
1answer
57 views

How to calculate the frequency of cyclohexane conformational interconversion?

My book mentioned that the energy barrier for cyclohexane to reach the half-chair conformation is 50.6 $\text{kJ mol}^{-1}$. It says that from this value, it was calculated that cyclohexane undergoes ...
8
votes
1answer
196 views

Covalent bond deformation

When do covalent bonds of a molecule $M$ extend or compress while no bonds in $M$ are broken? I can conceive of some possibilities but I don't know how common they are: Temperature changes ...
2
votes
1answer
153 views

Which is most stable conformation of optically inactive Butane–2,3–diol?

The most stable conformation of optically inactive Butane–2,3–diol is: (A) (B) (C) (D) I choose C as the correct answer but, in the answer key it given to be B. C is the staggered form and the ...
0
votes
1answer
411 views

Solvation effect on cyclohexane

I ran molecular dynamics simulation with a molecule of methylcyclohexane soaked into a water box. On the other hand I ran Monte Carlo with the molecule alone (no soaking). I performed this for the ...
0
votes
1answer
160 views

Methylcyclohexane chair conformers

I am trying to create the molecule of the methylcyclohexane in the equatorial and axial conformers. I read in this site about the chair conformation. My molecule looks like the following picture ...
1
vote
1answer
114 views

Percentage of a conformer in vacuum

I just started with Molecular dynamics simulations. My background is computer science but I'm learning about scientific computing and thus my jump into MD. Having said that, I was asked to calculate ...
3
votes
3answers
1k views

Which conformer of Beta D-glucose is more stable

I drew the two chair conformers of Beta D-glucose: Which one is more stable? I think it's the one with all of the OH groups in the equatorial position because of less steric hindrance, but I also ...
7
votes
1answer
132 views

Rotation energy barrier for carboxypyrazolate

In this molecule, which is 3,5-dimethyl-4-carboxypyrazolate (unless I got it wrong): I do not think there is free rotation around the bond indicated in red, because one can write a resonnance ...
6
votes
1answer
485 views

Effect of periodic acid on cyclohexane derivatives

Periodic acid (per-iodic acid, $\ce{HIO4}$ ) cleaves vicinal diols(to carbonyls) via a cyclic intermediate. Due to the cyclic intermediate, it needs a syn configuration for the $\ce{-OH}$ groups for ...